hPDE4D2 structure with inhibitor NPD-768
Singh, A.K., Brown, D.G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 364 | Homo sapiens | Mutation(s): 0  Gene Names: PDE4D, DPDE3 EC: 3.1.4.53 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q08499 (Homo sapiens) Explore Q08499  Go to UniProtKB:  Q08499 | |||||
PHAROS:  Q08499 GTEx:  ENSG00000113448  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q08499 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RLW (Subject of Investigation/LOI) Query on RLW | AA [auth B], JA [auth C], N [auth A], ZA [auth D] | 3-(3-cyclopentyloxy-4-methoxy-phenyl)-4,4-dimethyl-1~{H}-pyrazol-5-one C17 H22 N2 O3 OEXHNVPDHFPXCA-UHFFFAOYSA-N | |||
EPE Query on EPE | IA [auth C], L [auth A], XA [auth D], Y [auth B], Z [auth B] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N | |||
PEG Query on PEG | AB [auth D], KA [auth C] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
ZN Query on ZN | BA [auth C], E [auth A], MA [auth D], P [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | DA [auth C] EA [auth C] FA [auth C] G [auth A] GA [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MG Query on MG | CA [auth C], F [auth A], NA [auth D], Q [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 98.703 | α = 90 |
b = 110.935 | β = 90 |
c = 160.626 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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European Union (EU) | European Union | 602666 |